Quality parameters (38.0+)

Quality parameters section allows users to configure quality thresholds for the organization. Users with 'Manage Quality Parameters' role can edit the thresholds.

NGS Quality

• Set the Gene list threshold for your organization. Case validations will not be applied for cases with gene list containing fewer than the gene list threshold.

• Default value for the Gene list threshold is 50.

• Values above 0 and whole numbers are accepted.

Array Sample Quality

• Set the Array quality thresholds for your organization. If a sample’s quality values meet the criteria below, it will be classified as ‘High’; otherwise, it will be classified as ‘Low’.

• Default thresholds are Call Rate >= 0.99 and LogR Dev <= 0.2

• Values between 0 to 1 are accepted.

NGS quality & Array sample quality section in Quality Parameters