Formatting DRAGEN MANTA VCFs for Emedgene

For DRAGEN versions earlier than 4.2, when ingesting a DRAGEN Manta VCF containing SVs of type INS, replace the following line in the VCF header:

##source=DRAGEN <version>

with

##source=MANTA-DRAGEN <version>

Example:

Replace

##source=DRAGEN 05.121.645.4.0.3

with

##source=MANTA-DRAGEN 05.121.645.4.0.3

Note: Variant types currently annotated and displayed in Emedgene are DEL, DUP and INS.