V35 Patches

Patches

Date

V35.4

December 3, 2024

V35.3

September 4, 2024

V35.2

July 24, 2024

V35.1

June 25, 2024

Login | Fixed an issue affecting SSO integrations in legacy Emedgene clouds.
Add new case | Fixed an issue uploading BSSH files from the UI.
Add new case | Reanalysis | Fixed an issue reporting on tagged variants that are not present in a case reanalysis due to changed input files.
Pipeline | Fixed issue resulting in failed ingestion of DRAGEN targeted.json where genotype is null.
Pipeline | Added support for ingestion of software only DRAGEN outputs.
Pipeline | Improving support of joint called files for Hom reference genotype in parents.
Pipeline | Fixed issue causing GATK cases to fail when they contain infinity value.
Analysis Tools | Preset Filters | Added support for the candidate gene query even when gene list is boosted.

Add New Case | Fixed an issue that caused Pending Sequencing workflows to fail in V35.
Edit Case | Fixed a bug that prevented saving and running edited cases that were opened on versions <V35.
Pipeline | Fixed an issue causing more frequent case failures in V35 due to incorrect infrastructure assignment to cases where BED selection for region of interest is larger than expected.
Analysis Tools and Report/Export | V35.0 added support for large CNVs (over 20M bp). This caused ‘case incompatible’ errors for some CNV filters and in exporting/reporting. This hotfix fixes both issues.
Curate | Batch upload – Fixed a bug that resulted in variants added to Curate via the batch uploader to only be available in the original reference, instead of in both with liftover-on-the-fly.
User Access | Fixed a bug causing users belonging to several domains to lose their roles when switching between domains.
Propagations of fixes from v34.6 and v34.7 including the ability to update an organization to gnomAD 4.1 non-UKB data for SNVs/indels.

Edit Case | Fixed a bug preventing a rerun of cases when original files are no longer available on BSSH.
Pipeline | Expanded RNA disease associated gene list in transcript selection logic. The genes added to the exception list are:
- RNU7-1 RNA, small nuclear Aicardi-Goutieres syndrome 9
- RNU4-2 RNA, U4 small nuclear 2
Pipeline: Multiple fixes to improve pipeline robustness and reduce failure rates.
Lab Tab | Fixed a bug resulting in no data loaded to the lab tab for new organizations.
Analysis Tools | Filters | Fixed a bug for Variant Effect Filters, when moving from simple to advanced, not all variant effects were available for filtering, which also caused a variant count discrepancy.
Analysis Tools | Preset Filters | Fixed a bug that always showed the description of removing polymorphic variants as ‘Display polymorphism: True’ although the behavior of the filter correctly removed the variants.
Variant Page | Embedded IGV | Improved IGV performance by reducing API calls when moving between variants.
Variant Page | Embedded IGV | Option to toggle embedded IGV off to improve performance for customers using external visualization tools.
Export | Fixed a bug failing the export of parental data for some customers.

Edit Case | Fixed an issue that could prevent reanalysis of cases that were created via API and were missing fields required in v35.
Cases Page | Fixed a rarely occurring issue where cases can be displayed with the good quality green icon even though they contain an insufficient coverage warning.
Analysis Tools | Filters | Fix an issue that caused frameshift indels to disappear from variant table when moving between simple and advanced mode in the quality filters.
Curate | Batch upload enhancement that will ensure all characters uploaded to Curate are supported in Analyze.
Curate | Curate now supports MNVs that are supported in Analyze, which are MNV indels only.
Curate | Fixed an issue that prevented genes with no gene metrics to be uploaded to Curate.
Propagations from V34.5.

Last updated 17 days ago

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