User roles

Emedgene users are defined by roles. In Illumina environments only, Roles and Permissions are now managed through IAM (previously via User Management in EMG Settings) . Access to the User Management tab (Users card) is disabled and redirects to the IAM application.

The available roles for Emedgene in IAM are described below:

Emedgene Role/IAM Scope	Description
Acmg Tags	Allow user to see ACMG Tags
Acmg Tags Edit	Allow user to edit ACMG classification
Add New Test	Allow user to add new test
Apidocs	Allow user to see api docs
Auto Analysis	Allow seeing auto analysis results
Candidate Compound With	Allow user to merge and split compound variants
Change Finalized Test Status	Allow user the user to unlock a finalized case
Check Preset	Allow user to mark case's presets as reviewed
Comment	Allow user to activity comment
Comment Delete	Allow user to delete comment
Create Custom Preset Group	Allow user to create Custom Preset Group
Create Report	Allow user to create report template
Create Variant	Allow user to create variant manually
Detailed Version	Allow user to see all services versions
Developer	Allow user to see developer settings
Download	Allow user to download files
Due Date	Allow user to edit due date
Edit Case Labels	Allow edit labels of a case
Edit Test	Allow user to edit test's info
Evidence	Allow seeing evidence page
Evidence Edit	Allow user to edit the evidence page
Evidence Generate	Allow user to generate intial evidence
Evidence Pathogenicity Edit	Allow user to edit evidence pathogenicity
Evidence Text Edit	Allow user to edit evidence text
Gene Lists Read Only	Allow user to show the gene lists
Gnomad Genome	Allow user to see GnomAD Genome
Kms	Allow user to view Curate
Kms Create Gene	Allow user to create a new gene in Curate
Kms Create Variant	Allow user to create new variant in Curate
Kms Delete Variant	Allow user to delete a variant from Curate
Kms Export	Allow user to export/update variants from Analyze to Curate
Kms Export Data	Allow user to export genes and variants data from Curate
Kms Import Network Variant	Allow user to import from network variants from Curate
Kms Update Acmg	Allow user to update variant ACMG tags in Curate
Kms Update Disease Id	Allow user to update variant disease ID in Curate
Kms Update Gene Interpretation	Allow user to update gene interpretation in Curate
Kms Update Gene Note	Allow user to update gene notes in Curate
Kms Update Gene Transcript Ref Sequence	Allow user to update a gene selected transcript in Curate
Kms Update Interpretation	Allow user to update variant interpretation in Curate
Kms Update Note	Allow user to update variant note in Curate
Kms Update Pathogenicity	Allow user to update variant pathogenicity in Curate
Kms Update Transcript	Allow user to update variant transcript in Curate
Load Bam Igv	Allow user to load BAM files to desktop IGV
Manage Auto Analysis Tier	Allow user to update AI Shortlist mode from Org settings page
Manage Case Default Page	Allow user to manage default Case page
Manage Case Identifier	Allow user to manage case identifier
Manage Case Participants	Allow user to add or remove case participants
Manage Column Order	Allow user to manage analysis column order setting
Manage Empty Trash	Allow user to empty cases from trash bin
Manage Gene List Visibility	Allow user to manage gene list visibility
Manage Gene Lists	Allow user to manage gene lists
Manage Kit Bed	Allow user to manage kits and bed uploads
Manage Labels	Allow user to manage labels
Manage Multiple Tags	Allow user to enable multiple tagging
Manage Organization Dbs	Allow user to manage organization databases
Manage Platform Version	Allow user to manage platform version
Manage Poc	Allow user to update POC from Org settings page
Manage Pon	Allow user to add or delete PONs
Manage Pipeline Versions	Allow user to update pipeline version from Org settings page
Manage Quality Parameters	Allow user to manage sample quality configurations
Manage Report Timestamp	Allow user to manage report timestamp
Manage S3 Credentials	Allow user to manage organization's s3 credentials
Manage Sv Annotation	Allow user to manage SV annotation thresholds
Manage Test Presets	Allow user to create presets from gene lists
Manage Url Pattern	Allow user to manage organization URL pattern
Manager	Organizational admin (manager) role
Manager Edit Variant Tags	Allow user to manage variants tag
Manager Support Access	Enable/disable support access in management
Network	Allow user to see available networks, request to join, etc.
Network Create	Allow user to creare new network
Network Manage	Allow user to manage network
Pheno Score Col	Allow user to see the Phenomatch score in the Analysis table
Phenomatcher	Allow user to filter by phenotipic match
Preset Create	Allow user to create presets from analyze and settings page
Preset Delete	Allow user to delete a preset from the list of available Filterset in a preset group
Preset Group Create	Allow user to create and edit a preset groups
Preset Group Default	Allow user to assign a default preset group
Preset Group Download	Allow user to download a legacy preset group JSON file
Preset Group Hide	Allow user to hide a preset group
Preset Group Revert	Allow user to revert a migrated preset group
Preset Group Upload	Allow user to upload a JSON file to the create new preset group
Preset Lock	Allow user to lock and unlock of a preset
Preset Manage	Allow user to view/edit a preset in JSON format
Re Analysis Filter	Allow user to see re analysis candidates
Re Upload Tab	Allow user to re-upload files
Render Template	Allow user to preview a report template
Report	Allow user to export a report
Report Preview	Allow user to preview report as draft
Sanger Edit	Allow user to edit Sanger
Storage Provider	Allow user to manage storage providers
Tag Variant	Allow user to tag a variant
Test Status	Allow user to change a test status
Test Status Move To Trash	Allow user to change test status to move to trash
Test Status To Finalized	Allow user to change case status to finalized
Transcript Edit	Allow user to change the default transcript for variants
Unknown Phenomatch	Allow user to use unknown phenomatch variant filter
Upload	Allow user to upload samples
User	Regular user role
User Management	Allow user to manage users
User Read	Allow user access to organization data
User Rerun Case	Allow user to re-run cases
Versions Tab	Allow user to access the Versions tab

If you are not seeing some of the roles in IAM, please be in touch with tech support.