Finalizing a case
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The finalized case status locks the case to prevent further changes to interpretation notes, ACMG tags, variant tags, pathogenicity and case-level interpretations.
2. In the Case interpretation widget, indicate the final result of the analysis:
Confidently Solved (Positive),
Likely Solved (Positive),
Further Investigation (Uncertain), or
Unsolved (Negative).
Confidently Solved, Likely Solved, and Further Investigation end-result categories correspond to the Resolved case status supercategory.
The indicated case analysis outcomes are used to calculate the diagnostic yield.
You have the flexibility to reorder variants by drag-and-drop. The order of variants will be preserved in the Clinical Report within each variant table and/or section, defined by a variant tag and a variant type (e.g. SNVs tagged "In report").
In Gene Interpretation, you can import gene annotation from Curate (30.0+).
5. To complete the Case interpretation flow, press Save.
You can download the report preview in a .pdf or .odt format.
All the generated reports are saved per case and each can be downloaded in a .pdf or .odt format.
1. On the , click on the Case interpretation button located on the top bar.
3. In the Case interpretation widget, select which tagged variants to include in the (if any). Variants are described at the genomic DNA level.
4. In the Case interpretation widget, you may add Interpretation notes, Gene interpretation, and Recommendations in the free-text format. This data is saved per case. If you’re using our customizable reporting solution, these fields will automatically populate in the .
6. If you're using Emedgene for reporting, you may want to have a look at the before finalizing a case. To do this, click on the eye button located rightmost on the , select a template and click Preview.
7. Change to Finalized.
Note: Finalizing a case will prevent users from making further changes to the case. To change information within the case (including and , Interpretation notes, Gene interpretation, and Recommendations, finalized variants, case analysis outcome, and , the case status must be changed from Finalized to another status.
8. To , click on the printer button on the , select Create New or choose a previously generated report (if any), then select a template and click Generate.
Note: for finalized cases, you can view the Case Result, Interpretation Notes and Finalized Variants in a new Finalize tab in the righthand panel of the case page. Another way to see the variants that were selected when the case was signed off is to select Finalized in the dropdown menu onthe .